SARSMutOnto: An Ontology for SARS-CoV-2 Lineages and Mutations.

Mutations allow viruses to continuously evolve by changing their genetic code to adapt to the hosts they infect. It is an adaptive and evolutionary mechanism that helps viruses acquire characteristics favoring their survival and propagation. The COVID-19 pandemic declared by the WHO in March 2020 is caused by the SARS-CoV-2 virus. The non-stop adaptive mutations of this virus and the emergence of several variants over time with characteristics favoring their spread constitute one of the biggest obstacles that researchers face in controlling this pandemic. Understanding the mutation mechanism allows for the adoption of anticipatory measures and the proposal of strategies to control its propagation. In this study, we focus on the mutations of this virus, and we propose the SARSMutOnto ontology to model SARS-CoV-2 mutations reported by Pango researchers. A detailed description is given for each mutation. The genes where the mutations occur and the genomic structure of this virus are also included. The sub-lineages and the recombinant sub-lineages resulting from these mutations are additionally represented while maintaining their hierarchy. We developed a Python-based tool to automatically generate this ontology from various published Pango source files. At the end of this paper, we provide some examples of SPARQL queries that can be used to exploit this ontology. SARSMutOnto might become a 'wet bench' machine learning tool for predicting likely future mutations based on previous mutations.

Consortium Framework Using Blockchain for Asthma Healthcare in Pandemics.

Asthma is a deadly disease that affects the lungs and air supply of the human body. Coronavirus and its variants also affect the airways of the lungs. Asthma patients approach hospitals mostly in a critical condition and require emergency treatment, which creates a burden on health institutions during pandemics. The similar symptoms of asthma and coronavirus create confusion for health workers during patient handling and treatment of disease. The unavailability of patient history to physicians causes complications in proper diagnostics and treatments. Many asthma patient deaths have been reported especially during pandemics, which necessitates an efficient framework for asthma patients. In this article, we have proposed a blockchain consortium healthcare framework for asthma patients. The proposed framework helps in managing asthma healthcare units, coronavirus patient records and vaccination centers, insurance companies, and government agencies, which are connected through the secure blockchain network. The proposed framework increases data security and scalability as it stores encrypted patient data on the Interplanetary File System (IPFS) and keeps data hash values on the blockchain. The patient data are traceable and accessible to physicians and stakeholders, which helps in accurate diagnostics, timely treatment, and the management of patients. The smart contract ensures the execution of all business rules. The patient profile generation mechanism is also discussed. The experiment results revealed that the proposed framework has better transaction throughput, query delay, and security than existing solutions.

Descriptive Analysis of Mobile Apps for Management of COVID-19 in Spain and Development of an Innovate App in that field.

To address the current pandemic, multiple studies have focused on the development of new mHealth apps to help in curbing the number of infections, these applications aim to accelerate the identification and self-isolation of people exposed to SARS-CoV-2, the coronavirus known to cause COVID-19, by being in close contact with infected individuals. The main objectives of this paper are: (1) Analyze the current status of COVID-19 apps available on the main virtual stores: Google Play Store and App Store for Spain, and (2) Propose a novel mobile application that allows interaction and doctor-patient follow-up without the need for real-time consultations (face-to-face or telephone). In this research, a search for eHealth and telemedicine apps related to Covid-19 was performed in the main online stores: Google Play Store and App Store, until May 2021. Keywords were entered into the search engines of the online stores and relevant apps were selected for study using a PRISMA methodology. For the design and implementation of the proposed app named COVINFO, the main weaknesses of the apps studied were taken into account in order to propose a novel and useful app for healthcare systems. The search yielded a total of 50 apps, of which 24 were relevant to this study, of which 23 are free and 54% are available for Android and iOS operating systems (OS). The proposed app has been developed for mobile devices with Android OS being compatible with Android 4.4 and higher. This app enables doctor-patient interaction and constant monitoring of the patient's progress without the need for calls, chats or face-to-face consultation in real time. This work addresses design and development of an application for the transmission of the user's symptoms to his regular doctor, based on the fact that only 16.6% of existing applications have this functionality. The COVINFO app offers a novel service: asynchronous doctor-patient communication, as well as constant monitoring of the patient's condition and evolution. This app makes it possible to better manage the time of healthcare personnel and avoid overcrowding in hospitals, with the aim of preventing the collapse of healthcare systems and the spread of the coronavirus.

Role of Artificial Intelligence for Analysis of COVID-19 Vaccination-Related Tweets: Opportunities, Challenges, and Future Trends

Pandemics and infectious diseases are overcome by vaccination, which serves as a preventative measure. Nevertheless, vaccines also raise public concerns;public apprehension and doubts challenge the acceptance of new vaccines. COVID-19 vaccines received a similarly hostile reaction from the public. In addition, misinformation from social media, contradictory comments from medical experts, and reports of worse reactions led to negative COVID-19 vaccine perceptions. Many researchers analyzed people's varying sentiments regarding the COVID-19 vaccine using artificial intelligence (AI) approaches. This study is the first attempt to review the role of AI approaches in COVID-19 vaccination-related sentiment analysis. For this purpose, insights from publications are gathered that analyze the (a) approaches used to develop sentiment analysis tools, (b) major sources of data, (c) available data sources, and (d) the public perception of COVID-19 vaccine. Analysis suggests that public perception-related COVID-19 tweets are predominantly analyzed using TextBlob. Moreover, to a large extent, researchers have employed the Latent Dirichlet Allocation model for topic modeling of Twitter data. Another pertinent discovery made in our study is the variation in people's sentiments regarding the COVID-19 vaccine across different regions. We anticipate that our systematic review will serve as an all-in-one source for the research community in determining the right technique and data source for their requirements. Our findings also provide insight into the research community to assist them in their future work in the current domain.

Modelo de riesgo de mortalidad en pacientes con sospecha de enfermedad por COVID-19 basado en información del centro coordinador de urgencias

Objective. To develop and validate a scale to stratify risk of 2-day mortality based on data collected during calls to an emergency dispatch center from patients with suspected coronavirus disease 2019 (COVID-19). Methods. Retrospective multicenter study of consecutive patients over the age of 18 years with suspected COVID-19 who were transported from home over the course of 3 months after telephone interviews with dispatchers. We analyzed clinical and epidemiologic variables and comorbidities in relation to death within 2 days of the call. Using data from the development cohort, we built a risk model by means of logistic regression analysis of categorical variables that were independently associated with 2-day mortality. The scale was validated first in a validation cohort in the same province and then in a cohort in a different province. Results. A total of 2320 patients were included. The mean age was 79 years, and 49.8% were women. The overall 2-day mortality rate was 22.6% (376 deaths of patients with severe acute respiratory syndrome coronavirus 2 infection). The model included the following factors: age, location (rural location as a protective factor), institutionalization, desaturation, lung sounds (rhonchi), and altered mental status. The area under the receiver operating characteristic curve for death within 2 days was 0.763 (95% CI, 0.725-0.802;P < .001). Mortality in patients at high risk (more than 2.4 points on the scale) was 60%. Conclusions. This risk scale derived from information available to an emergency dispatch center is applicable to patients with suspected COVID-19. It can stratify patients by risk of early death (within 2 days), possibly helping with decision making regarding whether to transport from home or what means of transport to use, and destination. Objetivo. Derivar y validar una escala basada en variables recogidas durante la llamada a un centro coordinador de urgencias (CCU) que permita estratificar el riesgo de mortalidad a 2 días en pacientes con sospecha de enfermedad por COVID-19. Método. Estudio multicéntrico retrospectivo que incluyó a los pacientes consecutivos ≥ 18 años durante 3 meses, catalogados como caso sospechoso de COVID-19 después de la entrevista telefónica del CCU y que precisaron evacuación. Se analizaron variables clínico-epidemiológicas, comorbilidades y resultado de muerte a los 2 días. Se derivó una escala con las variables categóricas asociadas de forma independiente con la mortalidad a 2 días mediante regresión logística, en la cohorte de derivación. La escala se validó mediante una cohorte de validación y otra de revalidación obtenida en una provincia distinta. Resultados. Se incluyeron 2.320 pacientes (edad mediana 79 años, 49,8% mujeres). La mortalidad global fue del 22,6% (376 casos en pacientes con SARS-CoV-2). El modelo incluyó edad, localización (zona rural como variable protectora), institucionalización, desaturación, roncus, taquipnea y alteración del nivel de conciencia. El área bajo la curva (ABC) para la mortalidad a 2 días fue de 0,763 (IC 95%: 0,725-0,802;p < 0,001). La mortalidad en los pacientes de alto riesgo (> 2,4 puntos) fue del 60%. Conclusiones. La escala, derivada a través de información obtenida con datos del CCU, es aplicable a pacientes con sospecha de infección por COVID-19, estratifica el riesgo de mortalidad precoz (menos de 2 días) y puede ser una herramienta que ayude en la toma de decisiones, referidas a su evacuación, destino o vector de transporte.

Sentiment Analysis Techniques Applied to Raw-Text Data from a Csq-8 Questionnaire about Mindfulness in Times of COVID-19 to Improve Strategy Generation.

The use of artificial intelligence in health care has grown quickly. In this sense, we present our work related to the application of Natural Language Processing techniques, as a tool to analyze the sentiment perception of users who answered two questions from the CSQ-8 questionnaires with raw Spanish free-text. Their responses are related to mindfulness, which is a novel technique used to control stress and anxiety caused by different factors in daily life. As such, we proposed an online course where this method was applied in order to improve the quality of life of health care professionals in COVID 19 pandemic times. We also carried out an evaluation of the satisfaction level of the participants involved, with a view to establishing strategies to improve future experiences. To automatically perform this task, we used Natural Language Processing (NLP) models such as swivel embedding, neural networks, and transfer learning, so as to classify the inputs into the following three categories: negative, neutral, and positive. Due to the limited amount of data available-86 registers for the first and 68 for the second-transfer learning techniques were required. The length of the text had no limit from the user's standpoint, and our approach attained a maximum accuracy of 93.02% and 90.53%, respectively, based on ground truth labeled by three experts. Finally, we proposed a complementary analysis, using computer graphic text representation based on word frequency, to help researchers identify relevant information about the opinions with an objective approach to sentiment. The main conclusion drawn from this work is that the application of NLP techniques in small amounts of data using transfer learning is able to obtain enough accuracy in sentiment analysis and text classification stages.

Telemedicine and e-Health research solutions in literature for combatting COVID-19: a systematic review.

COVID-19 had led to severe clinical manifestations. In the current scenario, 98 794 942 people are infected, and it has responsible for 2 124 193 deaths around the world as reported by World Health Organization on 25 January 2021. Telemedicine has become a critical technology for providing medical care to patients by trying to reduce transmission of the virus among patients, families, and doctors. The economic consequences of coronavirus have affected the entire world and disrupted daily life in many countries. The development of telemedicine applications and eHealth services can significantly help to manage pandemic worldwide better. Consequently, the main objective of this paper is to present a systematic review of the implementation of telemedicine and e-health systems in the combat to COVID-19. The main contribution is to present a comprehensive description of the state of the art considering the domain areas, organizations, funding agencies, researcher units and authors involved. The results show that the United States and China have the most significant number of studies representing 42.11% and 31.58%, respectively. Furthermore, 35 different research units and 9 funding agencies are involved in the application of telemedicine systems to combat COVID-19.

A Systematic Literature Review on e-Mental Health Solutions to Assist Health Care Workers During COVID-19.

Background: e-Mental health is an established field of exploiting information and communication technologies for mental health care. It offers different solutions and has shown effectiveness in managing many psychological issues. Introduction: The coronavirus disease 2019 (COVID-19) pandemic has critically influenced health care systems and health care workers (HCWs). HCWs are working under hard conditions, and are suffering from different psychological issues, including anxiety, stress, and depression. Consequently, there is an undeniable need of mental care interventions for HCWs. Under the circumstances caused by COVID-19, e-health interventions can be used as tools to assist HCWs with their mental health. These solutions can provide mental health care support remotely, respecting the recommended safety measures. Materials and Methods: This study aims to identify e-mental health interventions, reported in the literature, that are developed for HCWs during the COVID-19 pandemic. A systematic literature review was conducted following the PRISMA protocol by searching the following digital libraries: IEEE, ACM, ScienceDirect, Scopus, and PubMed. Results and Discussion: Eleven publications were selected. The identified e-mental health interventions consisted of social media platforms, e-learning content, online resources and mobile applications. Only 27% of the studies included empirical evaluation of the reported interventions, 55% listed challenges and limitations related to the adoption of the reported interventions. And 45% presented interventions developed specifically for HCWs in China. The overall feedback on the identified interventions was positive, yet a lack of empirical evaluation was identified, especially regarding qualitative evidence. Conclusions: The COVID-19 pandemic has highlighted the importance and need for e-mental health solutions for HCWs.

Automated medical diagnosis of COVID-19 through EfficientNet convolutional neural network.

COVID-19 infection was reported in December 2019 at Wuhan, China. This virus critically affects several countries such as the USA, Brazil, India and Italy. Numerous research units are working at their higher level of effort to develop novel methods to prevent and control this pandemic scenario. The main objective of this paper is to propose a medical decision support system using the implementation of a convolutional neural network (CNN). This CNN has been developed using EfficientNet architecture. To the best of the authors' knowledge, there is no similar study that proposes an automated method for COVID-19 diagnosis using EfficientNet. Therefore, the main contribution is to present the results of a CNN developed using EfficientNet and 10-fold stratified cross-validation. This paper presents two main experiments. First, the binary classification results using images from COVID-19 patients and normal patients are shown. Second, the multi-class results using images from COVID-19, pneumonia and normal patients are discussed. The results show average accuracy values for binary and multi-class of 99.62% and 96.70%, respectively. On the one hand, the proposed CNN model using EfficientNet presents an average recall value of 99.63% and 96.69% concerning binary and multi-class, respectively. On the other hand, 99.64% is the average precision value reported by binary classification, and 97.54% is presented in multi-class. Finally, the average F1-score for multi-class is 97.11%, and 99.62% is presented for binary classification. In conclusion, the proposed architecture can provide an automated medical diagnostics system to support healthcare specialists for enhanced decision making during this pandemic scenario.

Benchmarking Methodology for Selection of Optimal COVID-19 Diagnostic Model Based on Entropy and TOPSIS Methods

Nowadays, coronavirus (COVID-19) is getting international attention due it considered as a life-threatened epidemic disease that hard to control the spread of infection around the world. Machine learning (ML) is one of intelligent technique that able to automatically predict the event with reasonable accuracy based on the experience and learning process. In the meantime, a rapid number of ML models have been proposed for predicate the cases of COVID-19. Thus, there is need for an evaluation and benchmarking of COVID-19 ML models which considered the main challenge of this study. Furthermore, there is no single study have addressed the problem of evaluation and benchmarking of COVID diagnosis models. However, this study proposed an intelligent methodology is to help the health organisations in the selection COVID-19 diagnosis system. The benchmarking and evaluation of diagnostic models for COVID-19 is not a trivial process. There are multiple criteria requires to evaluate and some of the criteria are conflicting with each other. Our study is formulated as a decision matrix (DM) that embedded mix of ten evaluation criteria and twelve diagnostic models for COVID-19. The multi-criteria decision-making (MCDM) method is employed to evaluate and benchmarking the different diagnostic models for COVID19 with respect to the evaluation criteria. An integrated MCDM method are proposed where TOPSIS applied for the benchmarking and ranking purpose while Entropy used to calculate the weights of criteria. The study results revealed that the benchmarking and selection problems associated with COVID19 diagnosis models can be effectively solved using the integration of Entropy and TOPSIS. The SVM (linear) classifier is selected as the best diagnosis model for COVID19 with the closeness coefficient value of 0.9899 for our case study data. Furthermore, the proposed methodology has solved the significant variance for each criterion in terms of ideal best and worst best value, beside issue when specific diagnosis models have same ideal best value.